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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006418.1_1055_1792_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1055 - 1792
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
CCCGTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCTGCCTGACCG
Flanking Amino Acid:
GPARGYAKKPGAKVKGKSVP
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
72.4
0.5
0.8
65.1
30.7
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
47
-0.3
2
51.42
48.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023714
Chromosome:
PEDO01006418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021137
408 - 3668
3261