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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006418.1_11419_11876_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11419 - 11876
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
ACCCGGGCTCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTCCCTGATG
Flanking Amino Acid:
ITLRIQSKQDIFRKMISSNV
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
66
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
58.1
0.18
1
45.9
40.9
Minor 5ss
29.7
-2.3
3.2
40
40.1
Minor BPS
60.5
0.19
1.8
67.15
41

Associated Gene:

Gene:
TJP3
Ensembl Gene ID:
ENSAPLG00000004428
Chromosome:
PEDO01006418.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039056
8886 - 14722
5837
ENSAPLT00000028371
8886 - 14722
5837
ENSAPLT00000004583
8619 - 14750
6132
ENSAPLT00000040988
8619 - 14750
6132