Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006418.1_4092_4624_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4092 - 4624

Intron Length:

533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAA

U12 Branch Point Sequence:

CCGGGCTGAAGG

Flanking Amino Acid:

RIKVLTADTQEAMMDHSLQT

Intron Amino Acid Position:

559

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.9

33.7

Major BPS

49.7

-0

1.3

43.1

41.8

Major PPT

70.9

0.47

0.9

64.4

36.5

Minor 5ss

27.4

-2.6

2.7

31.6

42.2

Minor BPS

38.2

-1

2.1

34.86

46.2

Associated Gene:

Gene:

APBA3

Ensembl Gene ID:

ENSAPLG00000004226

Chromosome:

PEDO01006418.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032887

1530 - 7423

5894

ENSAPLT00000004353

1530 - 7495

5966