Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006418.1_9576_9721_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9576 - 9721

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCCCTCGG

5'SS Class:

weak_major

3'SS Sequence:

CTCTGGAGGACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTTCAT

U12 Branch Point Sequence:

TGGCTCTGGAGG

Flanking Amino Acid:

WTAAEQVRGRSLDLLNPPSR

Intron Amino Acid Position:

635

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.9

0.09

1.5

45.6

49.6

Major BPS

0.62

1.1

77.2

Major PPT

54.7

0.11

1.2

49.3

42.8

Minor 5ss

33.5

-1.9

42.4

44.1

Minor BPS

43.3

-0.6

1.8

44.85

41.3

Associated Gene:

Gene:

TJP3

Ensembl Gene ID:

ENSAPLG00000004428

Chromosome:

PEDO01006418.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039056

8886 - 14722

5837

ENSAPLT00000028371

8886 - 14722

5837