About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006423.1_1131_1320_R


Intron Information:

Intron Rank:
13

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
1131 - 1320

Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGA|GTGAGTTCT

5'SS Class:
major

3'SS Sequence:
CCTTTGTGCACAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCCTGAA

U12 Branch Point Sequence:
TCTTCCTGAAGA

Flanking Amino Acid:
VSLGISTLSLDFAGYQTRGC

Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.1
0.55
1
71.2
35.2

Major BPS
69.6
0.49
1
59.5
39

Major PPT
72.4
0.5
1
67.2
38

Minor 5ss
38.7
-1.3
2.9
47.2
42.3

Minor BPS
66
0.5
1.8
76.11
41.2

Associated Gene:

Gene:
MFSD2A

Ensembl Gene ID:

Chromosome:
PEDO01006423.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 9062
9042

21 - 9062
9042