About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006423.1_1743_1994_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1743 - 1994

Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCG|GTGAGTGGG

5'SS Class:
major

3'SS Sequence:
CCCCCCCCCGCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTGCCAT

U12 Branch Point Sequence:
GGAGGCTGACCT

Flanking Amino Acid:
KKTAVYAGIAPAIPFLILVV

Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.7
0.7
1
63.5
42.9

Major BPS
47.8
-0.1
1.6
58.2
48.3

Major PPT
67.8
0.4
0.7
60.8
21.8

Minor 5ss
27.1
-2.6
3
31.9
42.5

Minor BPS
41.5
-0.5
2.1
55.23
46

Associated Gene:

Gene:
MFSD2A

Ensembl Gene ID:

Chromosome:
PEDO01006423.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 9062
9042

21 - 9062
9042