Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006423.1_2079_2792_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2079 - 2792

Intron Length:

714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGCGTACG

5'SS Class:

major

3'SS Sequence:

CCCTCTTCTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

AGTGGGTGACCC

Flanking Amino Acid:

EFQNILLVIMLSATLTIPFW

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

64.3

41.4

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

77.1

0.61

0.7

72.5

25.7

Minor 5ss

29.7

-2.3

2.7

37.3

Minor BPS

35.2

-1.1

2.4

45.85

42.9

Associated Gene:

Gene:

MFSD2A

Ensembl Gene ID:

ENSAPLG00000011734

Chromosome:

PEDO01006423.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029993

21 - 9062

9042

ENSAPLT00000012251

21 - 9062

9042