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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006444.1_3798_3891_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3798 - 3891
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGTGCA
5'SS Class:
major
3'SS Sequence:
GCTCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGGGAA
U12 Branch Point Sequence:
CGGCCACCAACC
Flanking Amino Acid:
GWRRAGGRAESSKPIMEKRR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
66
40.2
Major BPS
45.8
-0.2
1.4
41.1
41.4
Major PPT
72.3
0.5
0.8
65.6
30.3
Minor 5ss
27
-2.6
3.1
33
42
Minor BPS
40.6
-0.7
2
47.3
41.2

Associated Gene:

Gene:
HES4
Ensembl Gene ID:
ENSAPLG00000030722
Chromosome:
PEDO01006444.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035460
2487 - 4244
1758