Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006445.1_4967_5451_F

Intron Information:

Intron Rank:

149534

Intron Class:

major

Intron Phase:

Intron Coordinates:

4967 - 5451

Intron Length:

485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTGCTATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAGAT

U12 Branch Point Sequence:

GTTCAGATAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

87.2

27.3

Major BPS

74.1

0.6

38.9

Major PPT

83.8

0.76

0.8

81.4

35.2

Minor 5ss

38.7

-1.3

3.4

58.4

46.2

Minor BPS

43.2

-0.5

2.3

58.87

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030473

Chromosome:

PEDO01006445.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036793

4144 - 6344

2201