Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006468.1_1023_1501_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1023 - 1501

Intron Length:

479

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGG|GCAGATCTG

5'SS Class:

major

3'SS Sequence:

GGAAGAGCAACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGATCAT

U12 Branch Point Sequence:

CGTGGCTGGATC

Flanking Amino Acid:

AGSARFGEGSGSFWQCPSAS

Intron Amino Acid Position:

404

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.3

60.1

44.1

Major BPS

55.3

0.13

1.4

59.7

46.7

Major PPT

47.1

-0.1

1.1

32.7

40.3

Minor 5ss

-2.9

4.1

31.3

42.9

Minor BPS

43.3

-0.5

50.42

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024685

Chromosome:

PEDO01006468.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037406

857 - 4099

3243