Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006468.1_2063_2185_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2063 - 2185

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTCCATTTG

5'SS Class:

weak_major

3'SS Sequence:

TTGGTGGGCGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AACTCAC

U12 Branch Point Sequence:

CCTAACTCACCC

Flanking Amino Acid:

CSGECWAVLQRSRCDGRVEV

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.5

0.06

1.3

56.9

43.1

Major BPS

68.4

0.46

0.9

69.3

26.9

Major PPT

45.1

-0.2

1.7

45.7

45.8

Minor 5ss

39.2

-1.2

3.1

41.6

Minor BPS

43.7

-0.5

52.1

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024685

Chromosome:

PEDO01006468.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033779

1330 - 4853

3524