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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006468.1_4631_4732_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4631 - 4732
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGATTCTG
5'SS Class:
weak_major
3'SS Sequence:
CTGCAGAGGTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGCTCTTTGAAG
Flanking Amino Acid:
ISLEWLPLWGLLADACEGRV
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.1
54.9
43.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
41.2
-0.5
1.7
39.2
43.3
Minor 5ss
35.4
-1.7
3.1
51.3
45
Minor BPS
58
0.11
1.5
60.1
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024685
Chromosome:
PEDO01006468.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033779
1330 - 4853
3524