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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006487.1_1174_1518_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1174 - 1518
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CATGTTGGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTTCTCCATT
Flanking Amino Acid:
ERPWENVPGAFKSPVPACWE
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
67.4
0.39
1.1
61.2
44.3
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
52.3
0.15
2
75.15
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029468
Chromosome:
PEDO01006487.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042901
21 - 5049
5029