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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006513.1_2094_2353_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2094 - 2353
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACGATG
5'SS Class:
major
3'SS Sequence:
TTTGTGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
ACAGCCCGAAGG
Flanking Amino Acid:
CPFYLPWFEKVKHGLVSRRC
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
69.5
42.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
76
0.58
0.9
69.9
36.6
Minor 5ss
36
-1.6
3.3
47.8
47.9
Minor BPS
39.7
-0.9
2
40.12
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007383
Chromosome:
PEDO01006513.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007680
7 - 2988
2982