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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006513.1_773_862_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
773 - 862
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TCTCCCCGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
ACATCATAAACC
Flanking Amino Acid:
MAAKYLKENAECWALNENMA
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1
60.3
39.3
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
65
0.34
1
61.5
34.9
Minor 5ss
28.9
-2.4
3.1
31
36.6
Minor BPS
51.7
0.03
1.9
62.86
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007383
Chromosome:
PEDO01006513.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007680
7 - 2988
2982