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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006513.1_94_214_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
94 - 214
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
AAGCCCTGTTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCCCAA
U12 Branch Point Sequence:
TCCTGCCCAAGC
Flanking Amino Acid:
FFTLFLNSFQRVMVTELMPM
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
49.1
-0
1.3
58.4
40.3
Major PPT
46.4
-0.2
1.7
50.9
43
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
39.8
-0.7
2.3
50.84
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007383
Chromosome:
PEDO01006513.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007680
7 - 2988
2982