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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006524.1_2259_2376_F

Intron Information:

Intron Rank:
128777
Intron Class:
major
Intron Phase:
Intron Coordinates:
2259 - 2376
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTAAAT
U12 Branch Point Sequence:
TTTGGGGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
49.7
-0
1.4
59
44.6
Major PPT
73.2
0.52
0.9
66.4
35.7
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
39.7
-0.7
2.8
68.4
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019304
Chromosome:
PEDO01006524.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026498
1843 - 3506
1664