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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006548.1_1499_1616_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1499 - 1616
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCTGG
5'SS Class:
weak_major
3'SS Sequence:
TCTCCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
TTTTTCTCCCCT
Flanking Amino Acid:
SGSLVQAALTQ
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
47.8
45.3
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
81.8
0.72
0.7
73.2
31.7
Minor 5ss
42.3
-0.9
3.1
56
48.2
Minor BPS
42
-0.5
3.7
79.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025736
Chromosome:
PEDO01006548.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020160
111 - 1621
1511