About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006568.1_137_271_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
137 - 271

Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGC|GTGAGTCCT

5'SS Class:
major

3'SS Sequence:
GGTGTCCCCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TAGTGAC

U12 Branch Point Sequence:
TGGTAGTGACGT

Flanking Amino Acid:
YGGNAAFLAIAFPPQHFGKL

Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
64.6
0.34
1.3
62.3
43.9

Major BPS
63.6
0.34
1.2
55.1
42.1

Major PPT
66.5
0.37
0.9
58.7
38.3

Minor 5ss
32.4
-2
2.9
38.2
39.5

Minor BPS
36.1
-0.9
2.4
54.2
46.9

Associated Gene:

Gene:
SLC43A3

Ensembl Gene ID:

Chromosome:
PEDO01006568.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 4054
4034

21 - 4054
4034