About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006568.1_731_817_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
731 - 817

Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTAGGGCAC

5'SS Class:
major

3'SS Sequence:
TGCCTCCCCGCAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CGCTGAC

U12 Branch Point Sequence:
CCTCGCTGACCC

Flanking Amino Acid:
DHLARGDTNLVSTYTNAFAF

Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.8
0.44
1.2
54.9
44.4

Major BPS
53.9
0.1
1.2
46.4
38.9

Major PPT
71.9
0.49
0.8
65.6
30.3

Minor 5ss
29.2
-2.4
3.5
32.5
42.6

Minor BPS
43.2
-0.5
2.1
52.11
45.1

Associated Gene:

Gene:
SLC43A3

Ensembl Gene ID:

Chromosome:
PEDO01006568.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 4054
4034

21 - 4054
4034