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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006579.1_1110_1181_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1110 - 1181
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTGGC
5'SS Class:
major
3'SS Sequence:
GTCCCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
CCACCCCCACGT
Flanking Amino Acid:
TMYTNGYEEMMFYGNVDKDT
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
59.5
39.9
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
70.7
0.47
0.8
61.4
35
Minor 5ss
26.7
-2.7
3.2
31.6
37.5
Minor BPS
36
-0.9
2.1
46.94
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025207
Chromosome:
PEDO01006579.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032802
13 - 1845
1833