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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006579.1_489_579_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
489 - 579
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGCAA
5'SS Class:
major
3'SS Sequence:
GCCCGTCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAC
U12 Branch Point Sequence:
CGTGCCGTGACG
Flanking Amino Acid:
ISDNPGEHETGEPEFRYTAG
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
61.8
40.3
Major BPS
48.6
-0
1.2
40.4
40
Major PPT
70
0.45
0.9
65.2
36.3
Minor 5ss
24.2
-3
3
21
37.5
Minor BPS
47.3
-0.3
2.2
54.87
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025207
Chromosome:
PEDO01006579.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032802
13 - 1845
1833