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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006579.1_704_788_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
704 - 788
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCGCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACCCAT
U12 Branch Point Sequence:
TGTCCCAGAGCT
Flanking Amino Acid:
RHHSYKDMRQLMKVVNEECP
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
48.7
-0
1.4
58.4
40.3
Major PPT
70
0.45
0.9
65.8
36
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
48.3
-0
2
73.09
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025207
Chromosome:
PEDO01006579.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032802
13 - 1845
1833