Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006580.1_2339_2496_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2339 - 2496

Intron Length:

158

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTACTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

CTCCCCTCTACT

Flanking Amino Acid:

ARLEEQATELAWRRFLMSHN

Intron Amino Acid Position:

213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

72.2

39.5

Major BPS

0.22

1.2

52.4

43.3

Major PPT

78.8

0.65

0.8

69.4

35.8

Minor 5ss

30.4

-2.2

3.2

31.9

42.5

Minor BPS

50.7

0.1

1.9

70.06

46.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019344

Chromosome:

PEDO01006580.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030417

21 - 3791

3771