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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006580.1_260_1030_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
260 - 1030
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
CCTCCCCAAGTC
Flanking Amino Acid:
NEAVVELEVSATGADPHLSL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
77.8
0.63
0.8
69.5
36.8
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
40.5
-0.7
2
47.96
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019344
Chromosome:
PEDO01006580.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030417
21 - 3791
3771