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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006601.1_1066_1149_R

Intron Information:

Intron Rank:
139541
Intron Class:
major
Intron Phase:
Intron Coordinates:
1066 - 1149
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTCTCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.2
0.64
0.9
71.7
38.7
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
58.9
0.28
1.8
73.6
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022549
Chromosome:
PEDO01006601.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032773
21 - 1330
1310