Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006639.1_1511_1582_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1511 - 1582

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTACGCCGG

5'SS Class:

major

3'SS Sequence:

TTTTACCCCGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

TCTCCTTTTACC

Flanking Amino Acid:

KTEYLTSWLNEPHFVASAYV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.39

1.2

49.2

Major BPS

74.2

0.6

39.4

Major PPT

0.67

0.8

74.3

30.4

Minor 5ss

36.7

-1.5

3.3

47.7

47.8

Minor BPS

63.4

0.4

1.6

39.3

Associated Gene:

Gene:

SEMA4C

Ensembl Gene ID:

ENSAPLG00000022065

Chromosome:

PEDO01006639.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036026

8 - 4104

4097

ENSAPLT00000027181

8 - 3256

3249

ENSAPLT00000018728

1190 - 4104

2915