Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006639.1_1735_1838_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1735 - 1838

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGGGG

5'SS Class:

major

3'SS Sequence:

GCTCGGTGCCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

GCTGCCCTGACG

Flanking Amino Acid:

VVARVARVCKGDVGGARTLQ

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

58.9

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

0.2

1.1

43.8

Minor 5ss

27.5

-2.6

3.6

37.8

Minor BPS

49.4

-0.1

1.9

56.11

45.2

Associated Gene:

Gene:

SEMA4C

Ensembl Gene ID:

ENSAPLG00000022065

Chromosome:

PEDO01006639.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036026

8 - 4104

4097

ENSAPLT00000027181

8 - 3256

3249

ENSAPLT00000018728

1190 - 4104

2915