Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006639.1_2242_2329_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2242 - 2329

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGTCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TGTGTGCTGACG

Flanking Amino Acid:

DEVPSPRPGACITDWHRQNG

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

75.3

34.6

Major BPS

66.3

0.4

1.1

41.8

Major PPT

74.2

0.54

0.9

65.4

41.1

Minor 5ss

30.4

-2.2

3.2

42.4

44.3

Minor BPS

41.3

-0.8

2.4

51.27

43.4

Associated Gene:

Gene:

SEMA4C

Ensembl Gene ID:

ENSAPLG00000022065

Chromosome:

PEDO01006639.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036026

8 - 4104

4097

ENSAPLT00000027181

8 - 3256

3249

ENSAPLT00000018728

1190 - 4104

2915