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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006639.1_2744_2832_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2744 - 2832

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGGT

5'SS Class:

strong_major

3'SS Sequence:

CCTGCCCTCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTCAC

U12 Branch Point Sequence:

TCACTGTCACCT

Flanking Amino Acid:

VESLVLAGRKKLLFAGSRFQ

Intron Amino Acid Position:

470

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

0.9

72.2

39.5

Major BPS

63.6

0.34

65.3

32.1

Major PPT

71.8

0.49

0.8

64.9

30.6

Minor 5ss

32.6

-2

3.4

46.8

48.5

Minor BPS

40.5

-0.6

2.3

57.74

Associated Gene:

Gene:

SEMA4C

Ensembl Gene ID:

ENSAPLG00000022065

Chromosome:

PEDO01006639.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036026

8 - 4104

4097