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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006639.1_2991_3194_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2991 - 3194

Intron Length:

204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGGGG

5'SS Class:

major

3'SS Sequence:

ACGGGGGCGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

GGAGCCGGGACG

Flanking Amino Acid:

SLCVRTEGLNGARGTGGDTS

Intron Amino Acid Position:

399

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

58.7

46.2

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

47.3

-0.1

1.1

40.7

Minor 5ss

28.2

-2.5

3.4

29.1

43.5

Minor BPS

40.1

-0.9

2.2

41.58

42.7

Associated Gene:

Gene:

SEMA4C

Ensembl Gene ID:

ENSAPLG00000022065

Chromosome:

PEDO01006639.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018728

1190 - 4104

2915