About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006639.1_601_828_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
601 - 828
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGCGGCCC
5'SS Class:
weak_major
3'SS Sequence:
TCCCTGTGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAA
U12 Branch Point Sequence:
TATCAACGAACA
Flanking Amino Acid:
AFQPKCTYIVKTSFGGVAFE
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.1
42.4
35.3
Major BPS
61.3
0.28
1.3
66
40.9
Major PPT
72.2
0.5
1
64.1
41.6
Minor 5ss
26.8
-2.7
3.3
30
36.7
Minor BPS
42.6
-0.5
2.1
59.08
39

Associated Gene:

Gene:
SEMA4C
Ensembl Gene ID:
ENSAPLG00000022065
Chromosome:
PEDO01006639.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027181
8 - 3256
3249