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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006647.1_882_1724_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
882 - 1724
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTCTCCTTATCC
Flanking Amino Acid:
FYDSRFLSLLRFYIFLTGIP
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82
0.72
0.8
75.8
32.1
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
75.6
0.78
1.6
82.19
38.3

Associated Gene:

Gene:
NDUFB5
Ensembl Gene ID:
ENSAPLG00000011659
Chromosome:
PEDO01006647.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012145
153 - 4609
4457