Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006655.1_1712_1881_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1712 - 1881

Intron Length:

170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCAGCCC

5'SS Class:

major

3'SS Sequence:

TCTCCGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

TCTGGAGCAATT

Flanking Amino Acid:

VHYKVDLDIAGTGNSFETVD

Intron Amino Acid Position:

526

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.1

40.1

Major BPS

52.1

0.05

1.3

41.8

Major PPT

79.4

0.66

0.8

72.7

Minor 5ss

24.9

-2.9

3.3

33.6

41.9

Minor BPS

36.2

-0.9

2.5

56.49

46.4

Associated Gene:

Gene:

AOC1

Ensembl Gene ID:

ENSAPLG00000025996

Chromosome:

PEDO01006655.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042745

370 - 4046

3677

ENSAPLT00000037564

370 - 4046

3677

ENSAPLT00000025564

716 - 4046

3331

ENSAPLT00000044447

370 - 4046

3677