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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006655.1_2447_2548_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2447 - 2548
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCGAG
5'SS Class:
major
3'SS Sequence:
CTCCGGCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGGAG
U12 Branch Point Sequence:
CGCTCCTCCTCC
Flanking Amino Acid:
GTPTDVHGAKLFDLRFNEER
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
61
39.7
Major BPS
37
-0.8
1.7
30.7
44
Major PPT
68.5
0.42
0.9
57.5
38.6
Minor 5ss
36.3
-1.5
3.3
45.4
49.7
Minor BPS
35.1
-1.1
3.5
50.84
45.9

Associated Gene:

Gene:
AOC1
Ensembl Gene ID:
ENSAPLG00000025996
Chromosome:
PEDO01006655.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025564
716 - 4046
3331