About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006667.1_501_579_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
501 - 579
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCGTGG
5'SS Class:
major
3'SS Sequence:
TATCTCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
GGTTTGTGACCC
Flanking Amino Acid:
VAKDKTLRKKDKEGPECPPT
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.2
48.3
44.7
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
79.5
0.66
0.8
74.2
30.5
Minor 5ss
34.8
-1.7
3.5
46.4
49
Minor BPS
43.2
-0.5
2.3
56.24
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023053
Chromosome:
PEDO01006667.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028775
21 - 1565
1545