About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006678.1_5440_6888_R

Intron Information:

Intron Rank:
136308
Intron Class:
major
Intron Phase:
Intron Coordinates:
5440 - 6888
Intron Length:
1449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTCTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.1
60.8
38.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90.1
0.9
0.7
85
29.3
Minor 5ss
33.8
-1.8
3.5
48
42.4
Minor BPS
73.5
0.82
1.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020753
Chromosome:
PEDO01006678.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037438
3425 - 7021
3597