Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006688.1_2912_3196_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2912 - 3196

Intron Length:

285

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTG|GCCGTGGGT

5'SS Class:

weak_major

3'SS Sequence:

AATTGGGATGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGGGAT

U12 Branch Point Sequence:

GGGGGAGGAATT

Flanking Amino Acid:

VGARDRVLALGLSASSPLSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.2

0.08

1.3

54.7

39.3

Major BPS

56.3

0.16

1.6

57.1

49.4

Major PPT

59.8

0.22

1.1

51.4

46.4

Minor 5ss

14.8

-4.1

26.5

38.9

Minor BPS

31.8

-1.3

2.2

43.08

40.7

Associated Gene:

Gene:

SEMA4A

Ensembl Gene ID:

ENSAPLG00000010052

Chromosome:

PEDO01006688.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036290

166 - 3421

3256