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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006690.1_396_509_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
396 - 509
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGCACC
5'SS Class:
major
3'SS Sequence:
GCTCACACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCTGCAGAAACC
Flanking Amino Acid:
SLDTLDLDFKGMFFYRGRES
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
66
39.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
62.3
0.28
0.9
51.3
37.7
Minor 5ss
34.1
-1.8
3
43.8
43.7
Minor BPS
39.9
-0.7
2.4
51.59
45.4

Associated Gene:

Gene:
PLTP
Ensembl Gene ID:
ENSAPLG00000013839
Chromosome:
PEDO01006690.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014425
171 - 3386
3216