Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006690.1_757_926_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

757 - 926

Intron Length:

170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCTG

5'SS Class:

major

3'SS Sequence:

ACGTCCCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TTCCCCTCACCC

Flanking Amino Acid:

TGMRFLVSQQICPSLEHASL

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

47.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

74.5

0.55

0.9

70.1

35.8

Minor 5ss

-1.9

3.6

46.2

49.1

Minor BPS

54.2

0.11

1.9

68.27

43.3

Associated Gene:

Gene:

PLTP

Ensembl Gene ID:

ENSAPLG00000013839

Chromosome:

PEDO01006690.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014425

171 - 3386

3216