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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006692.1_1781_2359_R

Intron Information:

Intron Rank:
141192
Intron Class:
major
Intron Phase:
Intron Coordinates:
1781 - 2359
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
CCCATGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
GTGTCCCCACGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.6
38.8
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
64.5
0.33
0.9
57
33.3
Minor 5ss
30.4
-2.2
3.1
40.5
38.7
Minor BPS
40.5
-0.7
2.2
51.98
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023304
Chromosome:
PEDO01006692.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017650
21 - 2600
2580