Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006693.1_421_570_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

421 - 570

Intron Length:

150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGCTCCCG

5'SS Class:

weak_major

3'SS Sequence:

GTGGTGGTGTCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

TCGGGGGTGACG

Flanking Amino Acid:

PGPGAALRPGGYWCQWWCHW

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.2

0.05

1.1

37.2

41.8

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

56.9

0.16

1.2

53.8

49.8

Minor 5ss

31.3

-2.1

3.1

42.5

Minor BPS

32.6

-1.5

2.7

37.04

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024108

Chromosome:

PEDO01006693.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028913

316 - 1299

984