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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006696.1_597_696_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
597 - 696
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
ACCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
TCCCCCCTACCC
Flanking Amino Acid:
DVQINDISLQDYIAVKEKYA
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
53
0.08
1.4
63
42.7
Major PPT
69.9
0.45
0.8
62
28
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
48.2
-0.1
2
60.5
44.7

Associated Gene:

Gene:
RPS5
Ensembl Gene ID:
ENSAPLG00000017615
Chromosome:
PEDO01006696.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045564
21 - 1637
1617