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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006696.1_907_1121_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
907 - 1121
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGGC
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
FEIIHLLTGENPLQVLVNAI
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.7
39.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.8
0.4
0.7
60.8
21.8
Minor 5ss
23.1
-3.1
3.4
32.1
42.7
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
RPS5
Ensembl Gene ID:
ENSAPLG00000017615
Chromosome:
PEDO01006696.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045564
21 - 1637
1617