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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006706.1_532_1959_R

Intron Information:

Intron Rank:
136467
Intron Class:
major
Intron Phase:
Intron Coordinates:
532 - 1959
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTTACAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.6
0.55
1
68.7
41.4
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020844
Chromosome:
PEDO01006706.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046704
21 - 2963
2943
ENSAPLT00000032238
312 - 2963
2652