Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006742.1_217_496_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

217 - 496

Intron Length:

280

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTGAGCTGG

5'SS Class:

weak_major

3'SS Sequence:

ATGCTATGCAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGCTAT

U12 Branch Point Sequence:

TCCTCCAGGAAG

Flanking Amino Acid:

SGGGYAGVLAPAVDTGFLPK

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.9

0.16

1.3

47.9

45.1

Major BPS

49.9

-0

1.4

50.2

44.9

Major PPT

46.8

-0.1

1.7

42.5

Minor 5ss

39.7

-1.2

51.1

45.8

Minor BPS

44.2

-0.6

1.9

49.42

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014698

Chromosome:

PEDO01006742.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015309

135 - 1048

914