Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006756.1_1980_2051_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1980 - 2051

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

CCCGTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAC

U12 Branch Point Sequence:

CACGCTGCCACC

Flanking Amino Acid:

LPSRRPRVTILEPQRDVTVP

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.7

0.42

1.1

56.5

42.7

Major BPS

-0.2

1.4

53.5

Major PPT

0.4

0.8

29.2

Minor 5ss

29.6

-2.3

3.2

45.3

Minor BPS

34.4

-1.2

2.3

38.37

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029927

Chromosome:

PEDO01006756.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047303

479 - 4943

4465