Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006756.1_2189_2272_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2189 - 2272

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGCGAG

5'SS Class:

major

3'SS Sequence:

CCACCTCCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CGTGCCTGACAC

Flanking Amino Acid:

VVPALFTIDEMTGEIRSTSR

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.9

0.33

1.1

40.4

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

72.2

0.5

0.8

65.3

30.2

Minor 5ss

31.5

-2.1

3.3

33.8

Minor BPS

44.8

-0.4

1.9

53.08

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029927

Chromosome:

PEDO01006756.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047303

479 - 4943

4465