Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006766.1_1513_2432_F

Intron Information:

Intron Rank:

132456

Intron Class:

major

Intron Phase:

Intron Coordinates:

1513 - 2432

Intron Length:

920

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCTTT

5'SS Class:

major

3'SS Sequence:

CTATGTTTGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

AATCCTGTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

1.3

78.8

38.3

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

69.1

0.43

69.4

41.5

Minor 5ss

45.2

-0.5

65.1

46.2

Minor BPS

53.7

0.19

72.84

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021181

Chromosome:

PEDO01006766.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046739

851 - 4334

3484