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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006775.1_3074_3223_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3074 - 3223
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAACCTAC
5'SS Class:
weak_major
3'SS Sequence:
GCTCTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CTACCACTAACG
Flanking Amino Acid:
EKALQDAKLPRYQYLRRMGN
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
60.6
41.3
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
74.1
0.54
0.8
65.3
36.2
Minor 5ss
50.7
0.02
2.6
68.1
43.1
Minor BPS
47.4
-0.3
2
56.18
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023806
Chromosome:
PEDO01006775.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044907
21 - 4332
4312